rs4170846 SNP Detail

Summary

• ID
  rs4170846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32695888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAG ATCGGATGCC CTCTTCTGGT
  R
  TGCCTGAAAA CAGCTACAGT GTACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6332931	mCV25152550_30354787	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss39417242	mCV25152550	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147954949	ENSMUSSNP7151618	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325137981	CHEV_16_32875604	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4170846					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32695888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	1828 bp proximal
Fyttd1	forty-two-three domain containing 1	1982 bp upstream
Rr514840	regulatory region 514840	1822 bp distal
Rr514841	regulatory region 514841	within coordinates
Rr514842	regulatory region 514842	393 bp proximal
Rr514843	regulatory region 514843	1441 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates