rs4170847 SNP Detail

Summary

• ID
  rs4170847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32696192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC AGGGTTGTAA AGACTCTTAG
  R
  ATAACTTATG CAGACTAAGG CCTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6332932	mCV25152562_30355084	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	A			G
ss39444668	mCV25152562	ABI	CRAMUS_MOUSE	f	SNP	G	A	A			G		A
ss48181856	NES12108655	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A		G		A	A		G	A	A	G		G
ss147954954	ENSMUSSNP888471	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325137982	CHEV_16_32875908	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4170847					SNP	G	A	A	A	A	G	G	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181856	NES12108655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32696192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	1524 bp proximal
Fyttd1	forty-two-three domain containing 1	1678 bp upstream
Rr404782	regulatory region 404782	1993 bp upstream
Rr514841	regulatory region 514841	301 bp distal
Rr514842	regulatory region 514842	89 bp proximal
Rr514843	regulatory region 514843	1137 bp proximal
Rr514844	regulatory region 514844	1934 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	1953 bp upstream
Tssr140832	transcription start site region 140832	1787 bp downstream
Tssr140833	transcription start site region 140833	1815 bp downstream
Tssr140834	transcription start site region 140834	1865 bp downstream
Tssr140835	transcription start site region 140835	1901 bp downstream