rs4170849 SNP Detail

Summary

• ID
  rs4170849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32696398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG AGATCTGCCT GCCTCTCAGT
  R
  CTAAGTCCAA AGGTGCCTGG CCTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss6332934	mCV25152573_30355290	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	G
ss39447833	mCV25152573	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147954958	ENSMUSSNP4477387	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G	G
ss325137984	CHEV_16_32876114	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs4170849					SNP	A	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32696398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	1318 bp proximal
Fyttd1	forty-two-three domain containing 1	1472 bp upstream
Rr404782	regulatory region 404782	1787 bp upstream
Rr514841	regulatory region 514841	507 bp distal
Rr514842	regulatory region 514842	within coordinates
Rr514843	regulatory region 514843	931 bp proximal
Rr514844	regulatory region 514844	1728 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	1747 bp upstream
Tssr138061	transcription start site region 138061	1805 bp upstream
Tssr138062	transcription start site region 138062	1857 bp upstream
Tssr140832	transcription start site region 140832	1581 bp downstream
Tssr140833	transcription start site region 140833	1609 bp downstream
Tssr140834	transcription start site region 140834	1659 bp downstream
Tssr140835	transcription start site region 140835	1695 bp downstream