rs4170851 SNP Detail

Summary

• ID
  rs4170851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32697359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT ACACGAACAG AACACTTGAC
  R
  CTGTTTTTTT TTCCTTAGAT GAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss6332936	mCV25152575_30356251	CRAMUS	CRAMUS_MOUSE	f	SNP		G	A				G	G
ss39434071	mCV25152575	ABI	CRAMUS_MOUSE	f	SNP		G	A				G	G
ss48181870	NES12108546	PERLEGEN	MM_PANEL2	f	SNP	G			A	G	G		G	G		G	G
ss147954975	ENSMUSSNP4877803	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss325137986	CHEV_16_32877075	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs4170851					SNP	G	G	A	A	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181870	NES12108546	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32697359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	357 bp proximal
Fyttd1	forty-two-three domain containing 1	511 bp upstream
Rr404782	regulatory region 404782	826 bp upstream
Rr514841	regulatory region 514841	1468 bp distal
Rr514842	regulatory region 514842	850 bp distal
Rr514843	regulatory region 514843	within coordinates
Rr514844	regulatory region 514844	767 bp proximal
Rr514845	regulatory region 514845	1152 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	786 bp upstream
Tssr138061	transcription start site region 138061	844 bp upstream
Tssr138062	transcription start site region 138062	896 bp upstream
Tssr138063	transcription start site region 138063	1096 bp upstream
Tssr138064	transcription start site region 138064	1112 bp upstream
Tssr140832	transcription start site region 140832	620 bp downstream
Tssr140833	transcription start site region 140833	648 bp downstream
Tssr140834	transcription start site region 140834	698 bp downstream
Tssr140835	transcription start site region 140835	734 bp downstream