rs4170852 SNP Detail

Summary

• ID
  rs4170852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32697445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAT AACAGGCATG CTTCCACGCA
  R
  GTGCGTTGTA GAAAATAAAG TAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	PWD/PhJ	SM/J
ss6332937	mCV25152585_30356337	CRAMUS	CRAMUS_MOUSE	f	SNP		A	A			G		A
ss39480515	mCV25152585	ABI	CRAMUS_MOUSE	f	SNP		A	A			G		A
ss48181872	NES12108548	PERLEGEN	MM_PANEL2	f	SNP	G			A	A		A	A		A
ss147954977	ENSMUSSNP697983	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
ss325137987	CHEV_16_32877161	CHEVERUD	SCREENING_POP	f	SNP									A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	PWD/PhJ	SM/J
rs4170852					SNP	G	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181872	NES12108548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32697445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	271 bp proximal
Fyttd1	forty-two-three domain containing 1	425 bp upstream
Rr404782	regulatory region 404782	740 bp upstream
Rr514841	regulatory region 514841	1554 bp distal
Rr514842	regulatory region 514842	936 bp distal
Rr514843	regulatory region 514843	within coordinates
Rr514844	regulatory region 514844	681 bp proximal
Rr514845	regulatory region 514845	1066 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	700 bp upstream
Tssr138061	transcription start site region 138061	758 bp upstream
Tssr138062	transcription start site region 138062	810 bp upstream
Tssr138063	transcription start site region 138063	1010 bp upstream
Tssr138064	transcription start site region 138064	1026 bp upstream
Tssr140832	transcription start site region 140832	534 bp downstream
Tssr140833	transcription start site region 140833	562 bp downstream
Tssr140834	transcription start site region 140834	612 bp downstream
Tssr140835	transcription start site region 140835	648 bp downstream