rs4170853 SNP Detail

Summary

• ID
  rs4170853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32697477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGAAAATG CCTGAGATGG TTTTGAGCTG TTATGTGGGG
  GATGGAATAA CAGGCATGCT TCCACGCAGG TGCGTTGTAG AAAATAAAGT AAAAAAAAAA
  R
  GGGGGGGGGG AATAACATTT CGTAAAGGGG AAACGAATTA TTAAGCTGGA ATGGAAACAT
  TAAGTTTTTC TATAAAGACG ATTAAGGAAA ATATATATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6332938	mCV25152586_30356369	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss39421522	mCV25152586	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147954981	ENSMUSSNP1942872	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4170853					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32697477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	239 bp proximal
Fyttd1	forty-two-three domain containing 1	393 bp upstream
Rr404782	regulatory region 404782	708 bp upstream
Rr514841	regulatory region 514841	1586 bp distal
Rr514842	regulatory region 514842	968 bp distal
Rr514843	regulatory region 514843	within coordinates
Rr514844	regulatory region 514844	649 bp proximal
Rr514845	regulatory region 514845	1034 bp proximal
Rr514846	regulatory region 514846	1981 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	668 bp upstream
Tssr138061	transcription start site region 138061	726 bp upstream
Tssr138062	transcription start site region 138062	778 bp upstream
Tssr138063	transcription start site region 138063	978 bp upstream
Tssr138064	transcription start site region 138064	994 bp upstream
Tssr140832	transcription start site region 140832	502 bp downstream
Tssr140833	transcription start site region 140833	530 bp downstream
Tssr140834	transcription start site region 140834	580 bp downstream
Tssr140835	transcription start site region 140835	616 bp downstream