rs4170857 SNP Detail

Summary

• ID
  rs4170857
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32699029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA AAGGATGCCG TGGTTTGCTG
  M
  TGATTATGTA AGAAAAGCAT GAGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss6332942	mCV25152599_30357919	CRAMUS	CRAMUS_MOUSE	f	SNP	A	C	C
ss39486391	mCV25152599	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss147954996	ENSMUSSNP5047604	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325137992	CHEV_16_32878745	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs4170857					SNP	A	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32699029 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	84 bp distal
Fyttd1	forty-two-three domain containing 1	within coordinates
Rr404782	regulatory region 404782	544 bp downstream
Rr514843	regulatory region 514843	904 bp distal
Rr514844	regulatory region 514844	519 bp distal
Rr514845	regulatory region 514845	within coordinates
Rr514846	regulatory region 514846	429 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	908 bp upstream
Tssr138060	transcription start site region 138060	828 bp downstream
Tssr138061	transcription start site region 138061	796 bp downstream
Tssr138062	transcription start site region 138062	765 bp downstream
Tssr138063	transcription start site region 138063	564 bp downstream
Tssr138064	transcription start site region 138064	538 bp downstream
Tssr140832	transcription start site region 140832	1024 bp upstream
Tssr140833	transcription start site region 140833	985 bp upstream
Tssr140834	transcription start site region 140834	944 bp upstream
Tssr140835	transcription start site region 140835	917 bp upstream