rs4170858 SNP Detail

Summary

• ID
  rs4170858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32699376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACCTGAAT ACTGAACTTG TGTTTCTTTT CTAATGGAAG
  GCTATCCTGG GCCTCAGAAG CCCAGGGACC ATACAGCTGA AGAGGGGAGC AGGTGTCCCA
  R
  TGGAAGGGCA TCCTGAGACA CTGGTGCCCA GGAACCACAC AGCTCTGAAA GGAAACCTTC
  GCAGCTCCCA GGGGAGGGTA TTCCCAGCTG AGCTGAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6332943	mCV25152708_30358266	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G	G	A
ss39422597	mCV25152708	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G	A
ss325137993	CHEV_16_32879092	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4170858					SNP	G	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32699376 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	431 bp distal
Fyttd1	forty-two-three domain containing 1	within coordinates
Rr404782	regulatory region 404782	891 bp downstream
Rr514843	regulatory region 514843	1251 bp distal
Rr514844	regulatory region 514844	866 bp distal
Rr514845	regulatory region 514845	335 bp distal
Rr514846	regulatory region 514846	82 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	1255 bp upstream
Tssr138060	transcription start site region 138060	1175 bp downstream
Tssr138061	transcription start site region 138061	1143 bp downstream
Tssr138062	transcription start site region 138062	1112 bp downstream
Tssr138063	transcription start site region 138063	911 bp downstream
Tssr138064	transcription start site region 138064	885 bp downstream
Tssr140832	transcription start site region 140832	1371 bp upstream
Tssr140833	transcription start site region 140833	1332 bp upstream
Tssr140834	transcription start site region 140834	1291 bp upstream
Tssr140835	transcription start site region 140835	1264 bp upstream