rs4170859 SNP Detail

Summary

• ID
  rs4170859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32699398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGT GGAAGGGCAT CCTGAGACAC
  K
  GGTGCCCAGG AACCACACAG CTCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss6332944	mCV25152709_30358288	CRAMUS	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss39427571	mCV25152709	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss147955002	ENSMUSSNP5581505	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G	G
ss325137994	CHEV_16_32879114	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs4170859					SNP	T	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32699398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	453 bp distal
Fyttd1	forty-two-three domain containing 1	within coordinates
Rr404782	regulatory region 404782	913 bp downstream
Rr514843	regulatory region 514843	1273 bp distal
Rr514844	regulatory region 514844	888 bp distal
Rr514845	regulatory region 514845	357 bp distal
Rr514846	regulatory region 514846	60 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	1277 bp upstream
Tssr138060	transcription start site region 138060	1197 bp downstream
Tssr138061	transcription start site region 138061	1165 bp downstream
Tssr138062	transcription start site region 138062	1134 bp downstream
Tssr138063	transcription start site region 138063	933 bp downstream
Tssr138064	transcription start site region 138064	907 bp downstream
Tssr140832	transcription start site region 140832	1393 bp upstream
Tssr140833	transcription start site region 140833	1354 bp upstream
Tssr140834	transcription start site region 140834	1313 bp upstream
Tssr140835	transcription start site region 140835	1286 bp upstream