rs4170861 SNP Detail

Summary

• ID
  rs4170861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32700077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG TTCTAGGCTG AGGAGGTGAC
  R
  AGATGCCTCC ATTTTGTCTG CTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss6332946	mCV25152720_30358966	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A
ss39451207	mCV25152720	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss147955028	ENSMUSSNP4636509	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325138000	CHEV_16_32879793	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs4170861					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32700077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	1132 bp distal
Fyttd1	forty-two-three domain containing 1	within coordinates
Rr404782	regulatory region 404782	1592 bp downstream
Rr514843	regulatory region 514843	1952 bp distal
Rr514844	regulatory region 514844	1567 bp distal
Rr514845	regulatory region 514845	1036 bp distal
Rr514846	regulatory region 514846	167 bp distal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	1956 bp upstream
Tssr138060	transcription start site region 138060	1876 bp downstream
Tssr138061	transcription start site region 138061	1844 bp downstream
Tssr138062	transcription start site region 138062	1813 bp downstream
Tssr138063	transcription start site region 138063	1612 bp downstream
Tssr138064	transcription start site region 138064	1586 bp downstream
Tssr140834	transcription start site region 140834	1992 bp upstream
Tssr140835	transcription start site region 140835	1965 bp upstream