rs4170862 SNP Detail

Summary

• ID
  rs4170862
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32700257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATA TTTCTTTACA TTCGTGTTAT
  S
  TCTTCTGTTA CTTGGAAAGC TTTTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss6332947	mCV25152721_30359146	CRAMUS	CRAMUS_MOUSE	f	SNP		G	G					C
ss39438396	mCV25152721	ABI	CRAMUS_MOUSE	f	SNP		G	G					C
ss48181880	NES12108451	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G		C	G	G		G	G		C
ss147955031	ENSMUSSNP4535687	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss325138001	CHEV_16_32879973	CHEVERUD	SCREENING_POP	f	SNP												G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs4170862					SNP	C	G	G	G	G	G	G	C	C	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181880	NES12108451	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32700257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	1312 bp distal
Fyttd1	forty-two-three domain containing 1	within coordinates
Rr404782	regulatory region 404782	1772 bp downstream
Rr514844	regulatory region 514844	1747 bp distal
Rr514845	regulatory region 514845	1216 bp distal
Rr514846	regulatory region 514846	347 bp distal
Rr514847	regulatory region 514847	1838 bp proximal
Tssr138062	transcription start site region 138062	1993 bp downstream
Tssr138063	transcription start site region 138063	1792 bp downstream
Tssr138064	transcription start site region 138064	1766 bp downstream