rs4172535 SNP Detail

Summary

• ID
  rs4172535
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:34840955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTAAAGTG AATGATTGTT TTGAAAAATA GTTCACTCCT
  TTATGAGAGG TGCGGGGGTG GTTTGCATTT TTGGATTTTA GTTTTTGGGG TTTTTTTTTT
  K
  GCTTGGTTTT TATTTTATTT AAGATTTATT TATTGTAGGA GTGTTTCACC TGCATGTATG
  TATATGTACC ATGTGTGTGC TTGGTGATTT TTGAGGTCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6334630	mCV25194884_32488501	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
ss39421045	mCV25194884	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
ss147971621	ENSMUSSNP6357829	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4172535					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34840955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	1500 bp proximal
Gm21691	predicted gene, 21691	within coordinates
Hacd2	3-hydroxyacyl-CoA dehydratase 2	1843 bp upstream
Rr404796	regulatory region 404796	1551 bp upstream
Rr515294	regulatory region 515294	1135 bp proximal
Rr515295	regulatory region 515295	1661 bp proximal
Tssr138201	transcription start site region 138201	1809 bp upstream
Tssr138202	transcription start site region 138202	1865 bp upstream