rs4172536 SNP Detail

Summary

• ID
  rs4172536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:34842485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGACGTCA ATCACCCTCT AGCTACTTGG GCAACTGTGT
  ACAGGGGTAA AGATACCTGG TACCTGGTAG AGGCTAAAGT TACCGAGGAC CAGGACATAT
  Y
  ATTTGGATCC AGCAGGAAGA GATGGTCATA AGATAGCAAA TGACCAGAGA CAAATTATCC
  GTAAGAACAG GCCTGACAAG TGAGGCCCAG GTTCACATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6334631	mCV25194883_32490031	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss39417975	mCV25194883	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4172536					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34842485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	within coordinates
Gm21691	predicted gene, 21691	within coordinates
Hacd2	3-hydroxyacyl-CoA dehydratase 2	313 bp upstream
Rr404796	regulatory region 404796	21 bp upstream
Rr515294	regulatory region 515294	within coordinates
Rr515295	regulatory region 515295	131 bp proximal
Rr515296	regulatory region 515296	1080 bp proximal
Tssr138201	transcription start site region 138201	279 bp upstream
Tssr138202	transcription start site region 138202	335 bp upstream
Tssr138203	transcription start site region 138203	1344 bp upstream