rs4172537 SNP Detail

Summary

• ID
  rs4172537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:34844173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAAACTG TATTTTGAAA ATCCATTCTT AATTATCTTT
  TACAGTAGGA AATACGTTGG CAGGGATCAA AACTTAAAAT ATACACAAAA TGCATATATA
  Y
  GGTGAAACCC TGTTTCAAAT CACTTTACTT GAATCAGCTA ATTTTGTATG TTCCTCAGAT
  GCTGGTATTA GCACAGGCCA ATAATACACA CTTGCACAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6334632	mCV23951761_32491718	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss39475284	mCV23951761	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4172537					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34844173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	499 bp distal
Gm21691	predicted gene, 21691	1467 bp upstream
Hacd2	3-hydroxyacyl-CoA dehydratase 2	within coordinates
Rr404796	regulatory region 404796	1366 bp downstream
Rr515294	regulatory region 515294	1558 bp distal
Rr515295	regulatory region 515295	1365 bp distal
Rr515296	regulatory region 515296	482 bp distal
Rr515297	regulatory region 515297	674 bp proximal
Tssr138201	transcription start site region 138201	1363 bp downstream
Tssr138202	transcription start site region 138202	1324 bp downstream
Tssr138203	transcription start site region 138203	342 bp downstream
Tssr138204	transcription start site region 138204	1805 bp upstream
Tssr138205	transcription start site region 138205	1843 bp upstream