rs4172538 SNP Detail

Summary

• ID
  rs4172538
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:34844386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGAAATTA TGTTGCTTTT TAATGAAGAA ATAGGCTTGG
  AGGGTGGTAG GCTGATTGTT AGTATTGCAG ATAGGAGGTG TTGAAACAAC ATGCCCTCAG
  K
  CTGGGCATGG TGGATCTCTG AGTTAAAGAA CAGCCTGGTC TCCAGAGCAA GTTTCAGGAT
  AGCCAGGGCT ACACAGTGTA ATCCTGTCTC AAAGAAAAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss6334633	mCV23951786_32491931	CRAMUS	CRAMUS_MOUSE	f	SNP	G	T
ss39484805	mCV23951786	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss147971635	ENSMUSSNP1636568	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs4172538					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34844386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	712 bp distal
Gm21691	predicted gene, 21691	1680 bp upstream
Hacd2	3-hydroxyacyl-CoA dehydratase 2	Intron
Rr404796	regulatory region 404796	1579 bp downstream
Rr515294	regulatory region 515294	1771 bp distal
Rr515295	regulatory region 515295	1578 bp distal
Rr515296	regulatory region 515296	695 bp distal
Rr515297	regulatory region 515297	461 bp proximal
Tssr138201	transcription start site region 138201	1576 bp downstream
Tssr138202	transcription start site region 138202	1537 bp downstream
Tssr138203	transcription start site region 138203	555 bp downstream
Tssr138204	transcription start site region 138204	1592 bp upstream
Tssr138205	transcription start site region 138205	1630 bp upstream