rs4172540 SNP Detail

Summary

• ID
  rs4172540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:34845248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTACATTT AGTTGAATCT GCTCTTTCTG AGATGGGCCT
  TAATGACCAG GTTCCATTTG CTTCCTTATA AAATTTAACA GGAAGCCACA AGGCCTAATA
  Y
  TAATTTTTTG AGGAGGAAGG TCAAGCAGAA AGGTAAGACC CACAACTGGA TGTCCTGGTG
  CTTTCTGGTT TCGTGGGTTT CTAATCAATA CACTTATTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss6334635	mCV23951788_32492793	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss39420675	mCV23951788	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147971645	ENSMUSSNP4282480	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs4172540					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34845248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	1574 bp distal
Hacd2	3-hydroxyacyl-CoA dehydratase 2	within coordinates
Rr515296	regulatory region 515296	1557 bp distal
Rr515297	regulatory region 515297	380 bp distal
Tssr138203	transcription start site region 138203	1417 bp downstream
Tssr138204	transcription start site region 138204	730 bp upstream
Tssr138205	transcription start site region 138205	768 bp upstream