rs4174810 SNP Detail

Summary

• ID
  rs4174810
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38604891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGACACG AGAGAGTCAG
  CACACCTGCT CCCTAGAAAG GCCAAATAGC ACCTGTTGCT CTATAAACTG CACATTCTCT
  TGGAGGGAAG CTAAACTCAG GGACGCTGCA CTCATTTGGC TGGGGCTGCT TTGGGTTTCT
  GTATAAGAAG GAATCACTGC ATGACTGGCT GTTTTAAGGA TGGTGTAGAT TAGGGAAACA
  K
  TGAGAAACGG GACAAGAAAG ATTCTGAATT ATGTCTTCCA CGAGGCAGAA CATGCAGAAA
  GGCCATGGTG TGGACGAATG GCAGTCAGTG CCGGCCGGGA TCCCAGCTTG GGCATTGGGA
  ATCAGGCTTC TTCGACTCAG AATTCCTGCT GTGACCTGTC AGCCATTCAT TCCTAGATAC
  ATTTCTTAGC GTTTAGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss6336932	mCV25133492_36189664	CRAMUS	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss39447883	mCV25133492	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss147999315	ENSMUSSNP6210137	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs4174810					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38604891 () rs orientation: forward

Symbol	Name	Function Class
Tssr138414	transcription start site region 138414	286 bp downstream
Tssr141114	transcription start site region 141114	1004 bp upstream
Tssr141115	transcription start site region 141115	916 bp upstream
Tssr141116	transcription start site region 141116	793 bp upstream
Tssr141117	transcription start site region 141117	663 bp upstream
Tssr141118	transcription start site region 141118	246 bp upstream
Upk1b	uroplakin 1B	within coordinates