rs4174839 SNP Detail

Summary

• ID
  rs4174839
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38631091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA AGCTAAACTC GATGGTTTAA
  W
  ATTGATTTTA TGTATGATAC ATGCG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6336961	mCV22999356_36220984	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss39450245	mCV22999356	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss148000153	ENSMUSSNP5372865	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325150336	CHEV_16_38810842	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4174839					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38631091 () rs orientation: forward

Symbol	Name	Function Class
Rr515903	regulatory region 515903	1828 bp proximal
Rr515904	regulatory region 515904	1994 bp proximal
Tex55	testis expressed 55	1477 bp downstream