rs4174842 SNP Detail

Summary

• ID
  rs4174842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38631718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT AGTCTACTCC ATAGGTCATC
  R
  CTGGTACATC AGCTTCCAGC TCATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss6336964	mCV22999365_36221611	CRAMUS	CRAMUS_MOUSE	f	SNP			G			A	G
ss39478126	mCV22999365	ABI	CRAMUS_MOUSE	f	SNP		G	G			A	G
ss60446728	NES16430071	PERLEGEN	MM_PANEL2	f	SNP	A			G	G		G	G		A	G		G
ss148000171	ENSMUSSNP171384	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss325150340	CHEV_16_38811469	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs4174842					SNP	A	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446728	NES16430071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38631718 () rs orientation: forward

Symbol	Name	Function Class
Rr515903	regulatory region 515903	1201 bp proximal
Rr515904	regulatory region 515904	1367 bp proximal
Tex55	testis expressed 55	850 bp downstream