rs4174843 SNP Detail

Summary

• ID
  rs4174843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38632292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA TTAAATCTCA TTCACTAATG
  R
  CAGAATGTAA AGGGCAGTGA TAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss6336965	mCV22999366_36222185	CRAMUS	CRAMUS_MOUSE	f	SNP		G			A	G
ss39442737	mCV22999366	ABI	CRAMUS_MOUSE	f	SNP		G			A	G
ss60446727	NES16430072	PERLEGEN	MM_PANEL2	f	SNP	A		G	G		G	A		A	A		A
ss148000176	ENSMUSSNP4267953	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
ss325150341	CHEV_16_38812043	CHEVERUD	SCREENING_POP	f	SNP								G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs4174843					SNP	A	G	G	G	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446727	NES16430072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38632292 () rs orientation: forward

Symbol	Name	Function Class
Rr515903	regulatory region 515903	627 bp proximal
Rr515904	regulatory region 515904	793 bp proximal
Tex55	testis expressed 55	276 bp downstream