rs4174845 SNP Detail

Summary

• ID
  rs4174845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38632507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTA AGAGTGCTCT CTCATTGGAG
  R
  CTTGACCTTA TTCTAGTTCA GGCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss6336967	mCV22999374_36222400	CRAMUS	CRAMUS_MOUSE	f	SNP		G			A		G
ss39418915	mCV22999374	ABI	CRAMUS_MOUSE	f	SNP		G			A		G
ss60446726	NES16430073	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G		G	G	G	G		A	A
ss148000188	ENSMUSSNP228089	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
ss325150343	CHEV_16_38812258	CHEVERUD	SCREENING_POP	f	SNP										G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs4174845					SNP	A	G	G	G	A	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446726	NES16430073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38632507 () rs orientation: forward

Symbol	Name	Function Class
Gm15803	predicted gene 15803	1845 bp upstream
Rr515903	regulatory region 515903	412 bp proximal
Rr515904	regulatory region 515904	578 bp proximal
Tex55	testis expressed 55	61 bp downstream