rs4174846 SNP Detail

Summary

• ID
  rs4174846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:38633025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA CAAAAGCTGG CGAGCTGCCT
  Y
  GGTGGTCAAA AGCACACTTG AGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss6336968	mCV22999375_36222919	CRAMUS	CRAMUS_MOUSE	f	SNP			C				T	C
ss39440895	mCV22999375	ABI	CRAMUS_MOUSE	f	SNP		C	C				T	C
ss60446725	NES16430074	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C			C	C		T	T	C
ss148000191	ENSMUSSNP1092376	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss325150344	CHEV_16_38812776	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs4174846					SNP	T	C	C	C	C	C	T	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446725	NES16430074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38633025 () rs orientation: forward

Symbol	Name	Function Class
Gm15803	predicted gene 15803	1327 bp upstream
Rr515903	regulatory region 515903	within coordinates
Rr515904	regulatory region 515904	60 bp proximal
Tex55	testis expressed 55	Intron