rs4174851 SNP Detail

Summary

• ID
  rs4174851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38634434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG GCCTGAGACT ACACCATCAG
  Y
  ATTCACAAGC GTATCCATGG AGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6336973	mCV22999392_36224314	CRAMUS	CRAMUS_MOUSE	f	SNP		C					T		C
ss39481922	mCV22999392	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss60446722	NES16430049	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C		C	C	C	C		T	C	C	T		C
ss148000202	ENSMUSSNP440223	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss325150351	CHEV_16_38814185	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4174851					SNP	T	C	C	C	C	C	T	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446722	NES16430049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38634434 () rs orientation: forward

Symbol	Name	Function Class
Gm15803	predicted gene 15803	within coordinates
Rr515903	regulatory region 515903	1225 bp distal
Rr515904	regulatory region 515904	1328 bp distal
Tex55	testis expressed 55	within coordinates