rs4179259 SNP Detail

Summary

• ID
  rs4179259
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43451397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA AAGAATTTCT GCACTTTGGG
  K
  ATTGGAATAG TTAAAACAGA GCATA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6341419	mCV22706887_40985600	CRAMUS	CRAMUS_MOUSE	f	SNP		G	T					G		T
ss39431761	mCV22706887	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		T
ss51819337	NES14537469	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	G	G		T	T	G	G	G	T	G	G	T
ss148057654	ENSMUSSNP5746199	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4179259					SNP	G	G	T	G	T	G	G	G	T	T	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819337	NES14537469	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43451397 () rs orientation: forward

Symbol	Name	Function Class
Rr318346	regulatory region 318346	804 bp proximal
Tssr138523	transcription start site region 138523	749 bp downstream
Tssr138524	transcription start site region 138524	700 bp downstream
Zbtb20	zinc finger and BTB domain containing 20	within coordinates