rs4179260 SNP Detail

Summary

• ID
  rs4179260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43452063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT TCAATTCTAA AATCCTAAAA
  Y
  CCATTCTCGG GATTACCAAA GAATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss6341420	mCV22706877_40986266	CRAMUS	CRAMUS_MOUSE	f	SNP		T	C				T		C
ss39446309	mCV22706877	ABI	CRAMUS_MOUSE	f	SNP		T	C				T		C
ss51819331	NES14537392	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T		C		T		C	C		C
ss148057659	ENSMUSSNP1811479	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss325162075	CHEV_16_43631813	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs4179260					SNP	T	T	C	C	C	T	T	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819331	NES14537392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43452063 () rs orientation: forward

Symbol	Name	Function Class
Rr318346	regulatory region 318346	138 bp proximal
Tssr138523	transcription start site region 138523	1415 bp downstream
Tssr138524	transcription start site region 138524	1366 bp downstream
Zbtb20	zinc finger and BTB domain containing 20	within coordinates