rs4179431 SNP Detail

Summary

• ID
  rs4179431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43799552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAC GCCAACGCCT GAGCAATAAA
  R
  AAATGAAAAG GGGGGAAGGG TCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss6341591	mCV23059111_41334352	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G
ss39449607	mCV23059111	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148058936	ENSMUSSNP2320122	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs4179431					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43799552 () rs orientation: forward

Symbol	Name	Function Class
4930552F14Rik	RIKEN cDNA 4930552F14 gene	154 bp upstream
Cpgi8279	CpG island 8279	21 bp proximal
Gm46552	predicted gene, 46552	820 bp upstream
Gramd1c	GRAM domain containing 1C	1161 bp downstream
Rr516233	regulatory region 516233	within coordinates
Rr516234	regulatory region 516234	592 bp proximal
Tssr141154	transcription start site region 141154	559 bp downstream
Tssr141155	transcription start site region 141155	1066 bp downstream
Zdhhc23	zinc finger, DHHC domain containing 23	within coordinates