rs4179609 SNP Detail

Summary

• ID
  rs4179609
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44133345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC CATTTGACAT GGAAGAAGAC
  M
  AAAGCAAGGT AAATATTAAT GATTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss6341774	mCV23985050_41670483	CRAMUS	CRAMUS_MOUSE	f	SNP		A	C				A	C
ss39482715	mCV23985050	ABI	CRAMUS_MOUSE	f	SNP		A	C				A	C
ss48200921	NES12140219	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	A	C		C	C	C		C	A	C
ss148060608	ENSMUSSNP7092347	ENSEMBL	ENSEMBL_Sanger	f	SNP			C					C
ss325162532	CHEV_16_44313095	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs4179609					SNP	A	A	C	C	A	C	A	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48200921	NES12140219	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44133345 () rs orientation: forward

Symbol	Name	Function Class
Rr321315	regulatory region 321315	655 bp proximal
Rr321316	regulatory region 321316	1656 bp proximal
Sidt1	SID1 transmembrane family, member 1	within coordinates