rs4179616 SNP Detail

Summary

• ID
  rs4179616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44135239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCGA CATCAGTGGT TTGGGATGCC
  Y
  TATTTGCCTG AAACTAGCTC TACTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6341781	mCV23985083_41672377	CRAMUS	CRAMUS_MOUSE	f	SNP		T	C					T	C
ss39428214	mCV23985083	ABI	CRAMUS_MOUSE	f	SNP		T	C					T	C
ss48200949	NES12140177	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C		C	C	T	C		C
ss148060645	ENSMUSSNP2198639	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss325162539	CHEV_16_44314989	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4179616					SNP	T	T	C	C	C	T	C	T	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48200949	NES12140177	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44135239 () rs orientation: forward

Symbol	Name	Function Class
Rr321315	regulatory region 321315	839 bp distal
Rr321316	regulatory region 321316	39 bp distal
Rr323669	regulatory region 323669	1566 bp proximal
Sidt1	SID1 transmembrane family, member 1	within coordinates