rs4179617 SNP Detail

Summary

• ID
  rs4179617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44136205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCT TTGATACCAG TTCCTAGGAC
  R
  ATACCCAGGC AGCATTTCCT ACGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss6341782	mCV23985084_41673343	CRAMUS	CRAMUS_MOUSE	f	SNP		A					G		A
ss39486286	mCV23985084	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss48200965	NES12140185	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		G	A	A	A		G		G
ss148060648	ENSMUSSNP6014622	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss325162540	CHEV_16_44315955	CHEVERUD	SCREENING_POP	f	SNP												A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs4179617					SNP	G	A	A	A	G	A	G	G	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48200965	NES12140185	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44136205 () rs orientation: forward

Symbol	Name	Function Class
Rr321315	regulatory region 321315	1805 bp distal
Rr321316	regulatory region 321316	1005 bp distal
Rr323669	regulatory region 323669	600 bp proximal
Sidt1	SID1 transmembrane family, member 1	within coordinates