rs4179717 SNP Detail

Summary

• ID
  rs4179717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44214059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT GGACTTGTTT CCAACTTTAA
  Y
  CTGTTACAAA TAAACATACT ATGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6341882	mCV23987152_41751713	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss39418417	mCV23987152	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148061292	ENSMUSSNP1684829	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss325162677	CHEV_16_44393809	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4179717					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44214059 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	1100 bp upstream
Rr516303	regulatory region 516303	1149 bp distal
Rr516304	regulatory region 516304	613 bp proximal
Rr516305	regulatory region 516305	1114 bp proximal
Tssr138551	transcription start site region 138551	1075 bp upstream
Tssr138552	transcription start site region 138552	1109 bp upstream