rs4179718 SNP Detail

Summary

• ID
  rs4179718
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44214359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATT TGGTCTGTTC ATTGGTATTT
  K
  TATGCCTTCT TTCATAAAGT AGCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6341883	mCV23987154_41752013	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss39480062	mCV23987154	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss148061297	ENSMUSSNP6637841	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325162678	CHEV_16_44394109	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4179718					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44214359 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	800 bp upstream
Rr516303	regulatory region 516303	1449 bp distal
Rr516304	regulatory region 516304	313 bp proximal
Rr516305	regulatory region 516305	814 bp proximal
Tssr138551	transcription start site region 138551	775 bp upstream
Tssr138552	transcription start site region 138552	809 bp upstream