rs4179719 SNP Detail

Summary

• ID
  rs4179719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44214951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC TCTGTCATCT GGTTCATAAA
  Y
  TGTTGGAATG CTGGGCTTCT GTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6341884	mCV23987158_41752605	CRAMUS	CRAMUS_MOUSE	f	SNP		C	C				T		C
ss39469202	mCV23987158	ABI	CRAMUS_MOUSE	f	SNP		C	C				T		C
ss48201319	NES12138256	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		T	C	C	C		T	C	T		C
ss148061301	ENSMUSSNP6010030	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss325162679	CHEV_16_44394701	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4179719					SNP	C	C	C	C	C	C	T	T	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48201319	NES12138256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44214951 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	208 bp upstream
Rr516304	regulatory region 516304	within coordinates
Rr516305	regulatory region 516305	222 bp proximal
Rr516306	regulatory region 516306	1888 bp proximal
Tssr138551	transcription start site region 138551	183 bp upstream
Tssr138552	transcription start site region 138552	217 bp upstream