rs4179720 SNP Detail

Summary

• ID
  rs4179720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44215133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT CACTACCAGC AGGCGGAGGG
  R
  CGTTGCTATG GCAACCGCAG TAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss6341885	mCV23987159_41752787	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G
ss39456241	mCV23987159	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148061306	ENSMUSSNP16199	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss325162680	CHEV_16_44394883	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs4179720					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44215133 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	26 bp upstream
Rr516304	regulatory region 516304	within coordinates
Rr516305	regulatory region 516305	40 bp proximal
Rr516306	regulatory region 516306	1706 bp proximal
Tssr138551	transcription start site region 138551	1 bp upstream
Tssr138552	transcription start site region 138552	35 bp upstream