rs4180946 SNP Detail

Summary

• ID
  rs4180946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45181705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTT TCTTTGAAGT CTTGGTGGAA
  Y
  GTGCCAGGGC CCTAGCACTG TTGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6343137	mCV22302363_42762486	CRAMUS	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss39487147	mCV22302363	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss48207867	NES12141548	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	C		C		T		C	T	T		T
ss148076595	ENSMUSSNP5789106	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss325165923	CHEV_16_45361455	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4180946					SNP	T	T	T	T	T	T	C	C	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48207867	NES12141548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45181705 () rs orientation: forward

Symbol	Name	Function Class
Gm30636	predicted gene, 30636	within coordinates
Gm30760	predicted gene, 30760	1083 bp downstream