rs4180947 SNP Detail

Summary

• ID
  rs4180947
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45181942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA ACCCACACTA TCTCAAAGGC
  M
  TATGAGCTCA TTATAAGGGG AGAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss6343138	mCV22302367_42762723	CRAMUS	CRAMUS_MOUSE	f	SNP		C	C		A		C
ss39474593	mCV22302367	ABI	CRAMUS_MOUSE	f	SNP		C	C		A		C
ss48207869	NES12141549	PERLEGEN	MM_PANEL2	f	SNP	C			A		C			A	C	C
ss148076600	ENSMUSSNP719910	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C
ss325165924	CHEV_16_45361692	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs4180947					SNP	C	C	C	A	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48207869	NES12141549	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45181942 () rs orientation: forward

Symbol	Name	Function Class
Gm30636	predicted gene, 30636	within coordinates
Gm30760	predicted gene, 30760	846 bp downstream