rs4181016 SNP Detail

Summary

• ID
  rs4181016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45204086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGCAACA GAATTAAGAA
  ACATGGAAAT ACAGAGATAT CTTAGTGTAT AGTTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTGTGTGT GTGTGTGTGT GTGTGTGTGT GTTTTCTTTT
  CTCTTCTTTT CTTCTTCTTC CTTTTTGGAT ATAAAGTTTC ACTCTGTAAC CGAGGAGTCT
  R
  TCCTGGAACT CACTGACTCA CTGAGAAGCC CAGAATGGCT TTGAAGTAGC AATGATCTAG
  TTCAAGGACC CTACCTCCTT GGTCTCTCAA GTGGTGGGAT CACAGACTTC TGACCTAGTA
  ATGAACTAGA GAATCACCTA AGACTCCAAA AAAAGGCGCC TGGTTCAGAA TACCAAATGA
  TCAAAGAGGT TCTAACTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss6343207	mCV24631231_42783785	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	G
ss39440422	mCV24631231	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss325166170	CHEV_16_45383836	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs4181016					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45204086 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr4884	transcription start site region 4884	1030 bp upstream
Tssr4885	transcription start site region 4885	985 bp upstream
Tssr4886	transcription start site region 4886	655 bp upstream
Tssr141220	transcription start site region 141220	1114 bp upstream
Tssr141221	transcription start site region 141221	1090 bp upstream
Tssr141222	transcription start site region 141222	970 bp upstream
Tssr141223	transcription start site region 141223	956 bp upstream
Tssr141224	transcription start site region 141224	933 bp upstream
Tssr141225	transcription start site region 141225	877 bp upstream
Tssr141226	transcription start site region 141226	841 bp upstream
Tssr141227	transcription start site region 141227	806 bp upstream
Tssr141228	transcription start site region 141228	765 bp upstream
Tssr141229	transcription start site region 141229	749 bp upstream
Tssr141230	transcription start site region 141230	597 bp upstream
Tssr141231	transcription start site region 141231	496 bp upstream
Tssr141232	transcription start site region 141232	454 bp upstream