rs4181042 SNP Detail

Summary

• ID
  rs4181042
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45215617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTTGTGT GAGCAATCTT TTCTGTTTTG TGTTTCTCAG
  AAATCATCTG ACAGTATCCT CCCCCCCTCC CTTCAGCACC CCTCTATGGG TACCCTTTAC
  S
  TATCAGAAGC AACAGGCAGG GCACAGTTCC CAGAGCCTGT TGTTTAGGAA AAAAAAAATC
  CATTTTTTTT CCCAAAAAGC AGAGAGGAGA CTTGCCCCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6343233	mCV24631604_42795304	CRAMUS	CRAMUS_MOUSE	f	SNP		C	C		G						C		G
ss12745078	AF029215_AN1660_1	ROCHEBIO	RPAMM	f	SNP	C			G	G	G	G	G		C	C	C	G				G		C
ss39438227	mCV24631604	ABI	CRAMUS_MOUSE	f	SNP		C	C		G						C		G
ss48208191	NES12148923	PERLEGEN	MM_PANEL2	f	SNP		C			G	G	G		C	C			G	C		C		C		C	C		G
ss148077769	ENSMUSSNP4769675	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		G								G
ss325166227	CHEV_16_45395367	CHEVERUD	SCREENING_POP	f	SNP															G							C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4181042					SNP	C	C	C	G	G	G	G	G	C	C	C	C	G	C	G	C	G	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208191	NES12148923	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45215617 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr141233	transcription start site region 141233	1875 bp downstream