rs4181044 SNP Detail

Summary

• ID
  rs4181044
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45215927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGACCTGG AAAATTTGTT TAGAAAAAAT GGATATAATT
  TCCCCAGGAG TGTCAACCTG TCCACTTTAT AATGGCCTCC CCAGCTAACA ACTATATTTC
  W
  GTTGGAATGT TGGCCTTATT TTGCCAACCA GTACAAACCA ACTCTTCTGT AGCTGGCTTT
  GCAGCCCATA AGTTAATTAG AAGCCAGTGG TAAGTGAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ
ss6343235	mCV24631876_42795613	CRAMUS	CRAMUS_MOUSE	f	SNP		T		T							A		T
ss12745077	AF029215_AN1659_4	ROCHEBIO	RPAMM	f	SNP			T	T	T	A	T	T		A	A	A	T			T	T	T				T
ss39479272	mCV24631876	ABI	CRAMUS_MOUSE	f	SNP		T		T							A		T
ss48208195	NES12148925	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T		T	A			T		A				T	A
ss148077782	ENSMUSSNP5428890	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T									T
ss325166230	CHEV_16_45395677	CHEVERUD	SCREENING_POP	f	SNP														T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ
rs4181044					SNP	T	T	T	T	T	A	T	T	T	A	A	A	T	T	A	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208195	NES12148925	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45215927 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr141233	transcription start site region 141233	1565 bp downstream