rs4181045 SNP Detail

Summary

• ID
  rs4181045
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45216246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG TTGTATGGTT GGATAGAAAG
  K
  GGAGGATTTC CCATTTGGGG GGTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss6343236	mCV24631877_42795932	CRAMUS	CRAMUS_MOUSE	f	SNP		G								G		T
ss12745120	AF029215_AN1674_2	ROCHEBIO	RPAMM	f	SNP	G		T	T	T	G	T	T	G	G	G	T		T	G	G		G
ss39420483	mCV24631877	ABI	CRAMUS_MOUSE	f	SNP		G								G		T
ss325166231	CHEV_16_45395996	CHEVERUD	SCREENING_POP	f	SNP													T				G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs4181045					SNP	G	G	T	T	T	G	T	T	G	G	G	T	T	T	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45216246 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	1815 bp proximal
Tssr141233	transcription start site region 141233	1246 bp downstream