rs4181046 SNP Detail

Summary

• ID
  rs4181046
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45216290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGGTGC TCAAATTCCA
  AGAATCAGTA AGTGCTGGGA GAGATAAAAA GTAAGGAAAA ATGAGTATGA TTTATGTGAT
  TATACTGTGT CTCATAGTTT ATGGGCTTAT CAGAGAATGG CTTAGATAGA TGCAAGTTGT
  ATGGTTGGAT AGAAAGGGGA GGATTTCCCA TTTGGGGGGT GGAGGGAGAA TGAGCAGGAG
  W
  GAAAGAACTA GAGAAAAATT GCAGAAATTA TAAAGTGTGA AATGAGAAGC AAAACAAACA
  AACAAACAAA CAAACAAAAC AAGGAGAAGA AGACAAGAAG GAGGGATATG AGAGGGAGGA
  AGAAAGACAG TAAGAGAAAT AGACAAATGA AAATTTTGGG AGAAAGCCTG ACCTACCATT
  GAGAAGGTCC ATCATGGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss6343237	mCV24631878_42795976	CRAMUS	CRAMUS_MOUSE	f	SNP			T									A		A
ss12745123	AF029215_AN1674_5	ROCHEBIO	RPAMM	f	SNP	T			A	A	A	A	A	A		A	A	A	A				A		T	T				A
ss39418111	mCV24631878	ABI	CRAMUS_MOUSE	f	SNP			T									A		A
ss48208197	NES12148926	PERLEGEN	MM_PANEL2	f	SNP		T			A	A		A		T	A		A	A	T		A		T			T	A			A
ss325166232	CHEV_16_45396040	CHEVERUD	SCREENING_POP	f	SNP																A								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs4181046					SNP	T	T	T	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	T	T	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208197	NES12148926	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45216290 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	1771 bp proximal
Rr327058	regulatory region 327058	1712 bp proximal
Tssr141233	transcription start site region 141233	1202 bp downstream