rs4181047 SNP Detail

Summary

• ID
  rs4181047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45216369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCAAGTTG TATGGTTGGA TAGAAAGGGG
  AGGATTTCCC ATTTGGGGGG TGGAGGGAGA ATGAGCAGGA GAGAAAGAAC TAGAGAAAAA
  TTGCAGAAAT TATAAAGTGT GAAATGAGAA GCAaaacaaa caaacaaaca aacaaacaaa
  R
  CAAGGAGAAG AAGACAAGAA GGAGGGATAT GAGAGGGAGG AAGAAAGACA GTAAGAGAAA
  TAGACAAATG AAAATTTTGG GAGAAAGCCT GACCTACCAT TGAGAAGGTC CATCATGGAC
  CAAGTAAGTA GAAGATCCCT GCATCCATCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss6343238	mCV24631888_42796055	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A
ss39452544	mCV24631888	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss148077789	ENSMUSSNP5628969	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325166233	CHEV_16_45396119	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs4181047					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45216369 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	1692 bp proximal
Rr327058	regulatory region 327058	1633 bp proximal
Tssr141233	transcription start site region 141233	1123 bp downstream