rs4181061 SNP Detail

Summary

• ID
  rs4181061
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45227364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGGGGA CTTCATCTAT
  TTTTTTTCTC CCTATTGTTG AACCTATTCT CCATTTGTTC TTATCATGTA GGATAGCTGG
  AAAAAACTCT AGGCAAATGT ATCCTCTGGT TCCACAGCTA GGGATCAATA CATTTTACTT
  TATCTCCAGC TAACAGATTG TGGCGTGCTA ATTCTACACC ATTATTTTTA ACCACTATGC
  S
  TTTCTCTCTC AATGAAGCCC AAGCCCTAGC AAAGGCTGTA ATAAGAAAAT GCAGGGATAT
  CTGGCTTTTG TAGTGAAAAA AATAACAGTG TTATAGGACA AAAGAAAAAG CAGATGCACA
  CATCCTGGGG ATGGTGAAAA CCAAAAACAC AGGGACTGGG GATCAGGGAG TCAAAGGATA
  GGCTTCACTA TGAAAAATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6343252	mCV24631949_42806977	CRAMUS	CRAMUS_MOUSE	f	SNP		G	C					C		C
ss39442462	mCV24631949	ABI	CRAMUS_MOUSE	f	SNP		G	C					C		C
ss48208381	NES12148734	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C		C	C	C		C	G	G	C		C
ss148078221	ENSMUSSNP1939777	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							C
ss325166349	CHEV_16_45407114	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4181061					SNP	G	G	C	C	C	G	C	C	C	C	C	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208381	NES12148734	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45227364 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	1543 bp proximal
Rr318479	regulatory region 318479	1964 bp distal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	1931 bp downstream
Tssr141235	transcription start site region 141235	1954 bp downstream