rs4181065 SNP Detail

Summary

• ID
  rs4181065
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45227996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCGGTAACCA GGGAACACTC CAGTCTAGAA TGAATCCAAA ATGTATTAGG TAAGACACAT
  TATTTAACCT CCCTGGAGCC TGGGGGTGGG GCGGGGCGGG GCGGGGGGGA AGACATCAGT
  ACTAATCTCA GGGTTAAATG AAACATAGGT GGGAAACTGA AAAATCATAA TGCTTCAATA
  TCTGAAACTT CTGAGTACTG ACAATGTTAT AATGAAAAAT TCCACACCTG CCATCATGTG
  ATAGTTATAG TCATCAAGAG GAACTGTATA ATCATGGCAT TATCTGAGGG TGTGTGTGAG
  W
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GACCTACATA AAAAATGAAT GAATTTCCTG
  TTTAGTCTAG AGTCCCACTC CCAAGAGATC TTATTGTGCA TATGCAAATA TACAAAAATC
  TTTATTAAAT AGCATTTTTG AATGGTAAAG ATCCTAGGAG CTTGCCTACT GCAAACCCAG
  CAAGTCAGTG CTGCAGCAAT ATCACAGGTG TGAGGTGACA ATTCCACGGT TAAAACCCTG
  AAGACAGTGC CCAGAATTTA ACGGATGCTA AAAGATTAAC CAATCAAGAA TTAACTAGAG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss6343256	mCV24632233_42807581	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A
ss39482881	mCV24632233	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs4181065					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45227996 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	911 bp proximal
Tssr141234	transcription start site region 141234	1299 bp downstream
Tssr141235	transcription start site region 141235	1322 bp downstream