rs4181066 SNP Detail

Summary

• ID
  rs4181066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45227998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTAACCAGG GAACACTCCA GTCTAGAATG AATCCAAAAT GTATTAGGTA AGACACATTA
  TTTAACCTCC CTGGAGCCTG GGGGTGGGGC GGGGCGGGGC GGGGGGGAAG ACATCAGTAC
  TAATCTCAGG GTTAAATGAA ACATAGGTGG GAAACTGAAA AATCATAATG CTTCAATATC
  TGAAACTTCT GAGTACTGAC AATGTTATAA TGAAAAATTC CACACCTGCC ATCATGTGAT
  AGTTATAGTC ATCAAGAGGA ACTGTATAAT CATGGCATTA TCTGAGGGTG TGTGTGAGAG
  W
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA CCTACATAAA AAATGAATGA ATTTCCTGTT
  TAGTCTAGAG TCCCACTCCC AAGAGATCTT ATTGTGCATA TGCAAATATA CAAAAATCTT
  TATTAAATAG CATTTTTGAA TGGTAAAGAT CCTAGGAGCT TGCCTACTGC AAACCCAGCA
  AGTCAGTGCT GCAGCAATAT CACAGGTGTG AGGTGACAAT TCCACGGTTA AAACCCTGAA
  GACAGTGCCC AGAATTTAAC GGATGCTAAA AGATTAACCA ATCAAGAATT AACTAGAGAG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss6343257	mCV24632234_42807583	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A
ss39481145	mCV24632234	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs4181066					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45227998 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	909 bp proximal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	1297 bp downstream
Tssr141235	transcription start site region 141235	1320 bp downstream