rs4181067 SNP Detail

Summary

• ID
  rs4181067
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45228000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAACCAGGGA ACACTCCAGT CTAGAATGAA TCCAAAATGT ATTAGGTAAG ACACATTATT
  TAACCTCCCT GGAGCCTGGG GGTGGGGCGG GGCGGGGCGG GGGGGAAGAC ATCAGTACTA
  ATCTCAGGGT TAAATGAAAC ATAGGTGGGA AACTGAAAAA TCATAATGCT TCAATATCTG
  AAACTTCTGA GTACTGACAA TGTTATAATG AAAAATTCCA CACCTGCCAT CATGTGATAG
  TTATAGTCAT CAAGAGGAAC TGTATAATCA TGGCATTATC TGAGGGTGTG TGTGAGAGAG
  W
  GAGAGAGAGA GAGAGAGAGA GAGAGAGACC TACATAAAAA ATGAATGAAT TTCCTGTTTA
  GTCTAGAGTC CCACTCCCAA GAGATCTTAT TGTGCATATG CAAATATACA AAAATCTTTA
  TTAAATAGCA TTTTTGAATG GTAAAGATCC TAGGAGCTTG CCTACTGCAA ACCCAGCAAG
  TCAGTGCTGC AGCAATATCA CAGGTGTGAG GTGACAATTC CACGGTTAAA ACCCTGAAGA
  CAGTGCCCAG AATTTAACGG ATGCTAAAAG ATTAACCAAT CAAGAATTAA CTAGAGAGTC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss6343258	mCV24632235_42807585	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A
ss39431417	mCV24632235	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs4181067					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45228000 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	907 bp proximal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	1295 bp downstream
Tssr141235	transcription start site region 141235	1318 bp downstream