rs4181068 SNP Detail

Summary

• ID
  rs4181068
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45228002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCAGGGAAC ACTCCAGTCT AGAATGAATC CAAAATGTAT TAGGTAAGAC ACATTATTTA
  ACCTCCCTGG AGCCTGGGGG TGGGGCGGGG CGGGGCGGGG GGGAAGACAT CAGTACTAAT
  CTCAGGGTTA AATGAAACAT AGGTGGGAAA CTGAAAAATC ATAATGCTTC AATATCTGAA
  ACTTCTGAGT ACTGACAATG TTATAATGAA AAATTCCACA CCTGCCATCA TGTGATAGTT
  ATAGTCATCA AGAGGAACTG TATAATCATG GCATTATCTG AGGGTGTGTG TGAGAGAGAG
  W
  GAGAGAGAGA GAGAGAGAGA GAGAGACCTA CATAAAAAAT GAATGAATTT CCTGTTTAGT
  CTAGAGTCCC ACTCCCAAGA GATCTTATTG TGCATATGCA AATATACAAA AATCTTTATT
  AAATAGCATT TTTGAATGGT AAAGATCCTA GGAGCTTGCC TACTGCAAAC CCAGCAAGTC
  AGTGCTGCAG CAATATCACA GGTGTGAGGT GACAATTCCA CGGTTAAAAC CCTGAAGACA
  GTGCCCAGAA TTTAACGGAT GCTAAAAGAT TAACCAATCA AGAATTAACT AGAGAGTCCA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss6343259	mCV24632254_42807587	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A
ss39421065	mCV24632254	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs4181068					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45228002 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	905 bp proximal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	1293 bp downstream
Tssr141235	transcription start site region 141235	1316 bp downstream