rs4181069 SNP Detail

Summary

• ID
  rs4181069
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45228004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGGGAACAC TCCAGTCTAG AATGAATCCA AAATGTATTA GGTAAGACAC ATTATTTAAC
  CTCCCTGGAG CCTGGGGGTG GGGCGGGGCG GGGCGGGGGG GAAGACATCA GTACTAATCT
  CAGGGTTAAA TGAAACATAG GTGGGAAACT GAAAAATCAT AATGCTTCAA TATCTGAAAC
  TTCTGAGTAC TGACAATGTT ATAATGAAAA ATTCCACACC TGCCATCATG TGATAGTTAT
  AGTCATCAAG AGGAACTGTA TAATCATGGC ATTATCTGAG GGTGTGTGTG AGAGAGAGAG
  W
  GAGAGAGAGA GAGAGAGAGA GAGACCTACA TAAAAAATGA ATGAATTTCC TGTTTAGTCT
  AGAGTCCCAC TCCCAAGAGA TCTTATTGTG CATATGCAAA TATACAAAAA TCTTTATTAA
  ATAGCATTTT TGAATGGTAA AGATCCTAGG AGCTTGCCTA CTGCAAACCC AGCAAGTCAG
  TGCTGCAGCA ATATCACAGG TGTGAGGTGA CAATTCCACG GTTAAAACCC TGAAGACAGT
  GCCCAGAATT TAACGGATGC TAAAAGATTA ACCAATCAAG AATTAACTAG AGAGTCCAAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss6343260	mCV24632255_42807589	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A
ss39470086	mCV24632255	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs4181069					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45228004 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	903 bp proximal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	1291 bp downstream
Tssr141235	transcription start site region 141235	1314 bp downstream