rs4181070 SNP Detail

Summary

• ID
  rs4181070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45228846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTCAAAA TGTCGGCCTC TCCTCTAAAT ACCTTGGCAT
  TTAACAAGAC CACTAAGCTG TGGCTTGCTC GCTGCAGTAC TGCTAGATGC TTCATGGTTT
  Y
  CTAGGCAAGG AGCAGAAATG CAGCAAGAGA GGGGGTGAGA AAGAGAGCAA GCGAGATTAC
  TAGGCTACAC CCCTGCTGCA GGTTAAGGAC CAACATAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6343261	mCV24632256_42808432	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T				C		T
ss39447051	mCV24632256	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				C		T
ss48208395	NES12148705	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		C	T	C		C	C	C	C		C
ss148078257	ENSMUSSNP2765108	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss325166359	CHEV_16_45408596	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4181070					SNP	C	C	T	T	T	C	C	C	T	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208395	NES12148705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45228846 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	61 bp proximal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	449 bp downstream
Tssr141235	transcription start site region 141235	472 bp downstream