rs4181071 SNP Detail

Summary

• ID
  rs4181071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45229355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCC GTAGAGAGAG CCCCCTCCAC
  Y
  GCACAGGCAG ACTCTACAGC TCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6343262	mCV24632266_42808941	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss39480560	mCV24632266	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148078262	ENSMUSSNP1770597	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325166360	CHEV_16_45409105	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4181071					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45229355 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	29 bp distal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	42 bp upstream
Tssr141235	transcription start site region 141235	within coordinates