rs4184241 SNP Detail

Summary

• ID
  rs4184241
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48123528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTGCAC AGCGTCATAG
  GATGAAGTGT TGAGAAGATC TGTCAGGAAT GTGCTGGAAA GGGGCATAGC ACAGCTGAGA
  CTGTTCTGTG ACCACTGGTA AGGCAGTTAT AGCATTAGAC CATAATATCA GTTGGGGGTG
  GGTGGGTAAC AGACCCTGAA ATAATACAAC TAGGTTATGG CACTTAGTTA CTATAAGCCA
  S
  CAGGCTAGAA CTTCCAAGAA GATTGAATGG CAGTTAGAGG GCCCTGACCT CAAGGACTAT
  GAGGCTGGGA TCCTTGTGGG CAAAGCAAAC AGGCAGTCAA GAGGCTGTAG CCCCACATCA
  AGAAGCAAAG AAGTCAAGGG GAAGAGGGAT GTATTGCAAT GGTTAGAGTA CCCATCTAAC
  ATCCCTGAGA CCCTGGGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6346459	mCV25059035_45665136	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	C	C	C
ss39482057	mCV25059035	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C	C
ss148113492	ENSMUSSNP1227178	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4184241					SNP	G	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48123528 () rs orientation: forward

Symbol	Name	Function Class
Rr516623	regulatory region 516623	984 bp proximal
Tssr138650	transcription start site region 138650	698 bp upstream
Tssr138651	transcription start site region 138651	749 bp upstream